Best 11 Payroll Software for Accountants in 2025
Sign up for a 30-day free trial of SimplePay, offering full access to all of our features. When you pay for your client’s subscription, it does not affect the billable user count. There is currently no limit to the number of clients that you can have on the ProAdvisor Preferred Pricing program. Other business leaders often readily share insights and recommendations.
The cheapest payroll services usually only facilitate payroll processing, while more expensive vendors provide additional services, such as payroll tax filing, HR assistance and benefits administration. These companies typically have a tiered pricing model where plans are offered at different price points. Each plan contains a specific feature set, though you may be able to add on services for an extra fee. An online payroll service provides businesses with the software and tools to run payroll digitally. Within the payroll service’s software, you enter each employee and some additional details, including their salary or hourly wage, hours worked, their benefit deductions and where they live.
- However, both the PEO Basic and PEO Plus products come with 24/7 support and access to the company’s HR experts.
- It will also minimise the number of documents and filing you need to manage as it will sync up with the data in your payroll dashboard.
- The mobile apps, self-service portals and employee benefits offered via an online payroll service can increase staff satisfaction, resulting in lower turnover and higher engagement.
- Wholesale billing allows you and your clients to reduce expenses while you share a discount that never expires with your clients for QuickBooks Online with or without Payroll.
- These payroll software programs for accountants are loaded with features and benefits to help you manage your accounting firm and provide excellent service to your clients.
You should consider several factors and thoroughly assess multiple online payroll services before signing an agreement. We recommend following the below steps to choose the right payroll software and provider. All businesses with at least one employee should consider using a payroll service to lessen the burden of payroll responsibilities.
- With paper checks, you can print them yourself or some payroll providers offer check-stuffing services where they print the checks, put them in envelopes and deliver them to your office.
- The system is intuitive, requiring only a few steps to run payroll each pay period.
- It allows staff to sign company documents online and can even notify them when certifications are about to expire.
- This can include payroll obligations, such as processing payroll, managing payroll taxes and maintaining compliance.
More accuracy in less time

Discover cloud-based payroll software for accountants and payroll bureaus that takes care of every kind of pay run. Download this free guide to cloud-based payroll software for accountants and payroll bureaus. Assess your needs, review the market, and explore expert recommendations. Take Staffology Online Payroll For Accountants Bureau for a test drive and explore powerful cloud-based payroll software for accountants and payroll bureaus. Payroll software with direct deposit is vital in ensuring timely payments for freelancers, temps, and gig workers.
Top Payroll Software Options for Accountants
Reduce admin costs and free up time with automated cloud payroll software for accountants and payroll bureaus. Artificial intelligence (AI) can further streamline your payroll services by calculating wages and distributing paychecks digitally. And machine learning makes it easier to classify different employees based on their salary, wages, or other compensation factors without spending hours on manual data entry.
Get multi-user access
If you still have questions, please visit our support page and select the best option to contact us. No, participation in the ProAdvisor Preferred Pricing program is free for QuickBooks Online Accountant users. Firms who select the “ProAdvisor discount” option are charged monthly for all firm-billed subscriptions. Paychex also integrates with more than 250 third-party applications and supports custom integrations through its API Developer Center. However, users should note that integrations are supported as add-ons to its three base subscriptions tiers — Paychex Flex Select, Paychex Flex Pro, and Paychex Enterprise. Plan pricing is not available on the Paychex website, so prospective customers will need to reach out to Paychex for custom pricing.
Employee self-service options
Manage unlimited clients/companies, employees, and payrolls with complete control. Using payroll software that automates repetitive tasks and ensures compliance can make it much easier to implement these best practices consistently. Deel is a global payroll platform specializing in international workforce management and contractor payments. OnPay provides payroll, HR and benefits capabilities that allows accountants to run their practice more efficiently. ADP’s small business solution offers payroll and HR functionality for companies with simpler needs.
The payroll features in Gusto’s entry-level Simple plan let you pay employees and contractors in a single state and include automatic payroll processing with the company’s AutoPilot feature. The HR features in the Simple package are basic but include health insurance administration, background checks and new-hire reporting to the state. HMRC’s PAYE tool offers basic features (such as payroll tax) and is only suitable for a small number of employees. If you’re looking for an Online Payroll product with more features to help you manage payroll, check out QuickBooks Payroll functionality.
Patriot Software
OnPay stands out for its transparent pricing—a base fee of $40 a month plus $6 per person. However, startups and firms with five or fewer accountants can find cheaper payroll options, such as Square and Wave Payroll, that provide the necessary features. Still, few competitors can match the features, support and affordability of OnPay’s payroll solutions. Accountants know how important it is to keep their clients happy, which also means keeping their clients’ employees happy. That’s why a proactive approach is necessary to prevent errors that can gum up the processing of payroll. OnPay’s stellar support for payroll accountants includes access to the company’s payroll experts to facilitate setting up and migrating their clients’ data.
Batch-oriented and fully automated, it quickly performs the payroll calculations for you. Online access to services and cross-client processing mean you can significantly increase the number of clients you serve, without buying add-on modules or hiring more staff. And because it’s part of the groundbreaking Accounting CS solution, Accounting CS Payroll ensures your team can work more closely, consistently, and accurately with clients than ever before. Wave also provides free invoice templates for specific industries that include legal offices, consulting businesses and freelancers. The templates can be downloaded as Word docs, Excel files, PDFs, Google Docs or Google Sheets. Intuit Online Payroll for Accounting Professionals is offered exclusively to accounting professionals interested in offering payroll services to non-QuickBooks clients.
The Basic payroll plan handles all of the payroll needs for you, but you are responsible for the payroll tax requirements. We have financial relationships with some companies we cover, earning commissions when readers purchase from our partners or share information about their needs. Our editorial team independently evaluates and recommends products and services based on their research and expertise.
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